Cytosim  PI
Cytoskeleton Simulator
Fiber Member List

This is the complete list of members for Fiber, including all inherited members.

abscissa(FiberEnd end) const FiberNaked
abscissa(real ab, FiberEnd from) const FiberNaked
abscissaM() const FiberNakedinline
abscissaP() const FiberNakedinline
abscissaP(const real n) const FiberNakedinline
addBinder(FiberBinder *)Fiber
addBrownianForces(real *rhs, real sc) const RigidFibervirtual
addNoise(real amount)PointSet
addPoint(Vector const &w)PointSet
addProjectionDiff(const real *, real *) const RigidFibervirtual
addr() const PointSetinline
addRigidity(const real *X, real *Y) const RigidFibervirtual
addRigidityMatUp(Matrix &, int offset) const RigidFibervirtual
addrPoint(const unsigned p) const PointSetinline
addSegmentM()FiberNaked
addSegmentP()FiberNaked
adjustSegmentation()FiberNaked
allocateBlock(unsigned)Mecable
allocatePoints(unsigned int nbp)Fibervirtual
RigidFiber::allocatePoints(unsigned nbp)RigidFibervirtual
block() const Mecableinline
Buddy() (defined in Buddy)Buddyinline
buddy(unsigned int ix) const Buddyinline
buddy(Buddy *b, unsigned int ix)Buddyinline
calculateMomentum(real[], bool divide=false)PointSet
calculateMomentum(real[], real[], bool divide=false)PointSet
clearPoints()PointSetinline
cutAlongPlane(FiberSet *, Vector const &n, real a)Fiber
cutM(real dlen)FiberNaked
cutP(real dlen)FiberNaked
deallocatePoints()PointSetvirtual
delayedSevering()Fiberprotected
detachBinders()Fiber
diffPoints(const real *src, const unsigned p)PointSetinlinestatic
diffPoints(const unsigned p) const PointSetinline
diffPoints(const unsigned int p, const unsigned int q) const PointSetinline
dir(real ab) const FiberNaked
dir(real ab, FiberEnd from) const FiberNaked
dirEnd(FiberEnd which) const FiberNaked
dirP(unsigned p) const FiberNakedinline
dispFiber
dragCoefficient() const RigidFiberinlinevirtual
dragCoefficientSurface()Fiberprotected
dragCoefficientVolume()Fiberprotected
dynamicState(FiberEnd which) const Fiberinlinevirtual
exactEnd(FiberEnd) const FiberNaked
Fiber(FiberProp const *)Fiber
FiberNaked()FiberNaked
firstBinder() const Fiber
fleck() const Objectinline
fleck(int f) const Objectinline
foldPosition(const Modulo *)PointSetvirtual
foldPositionG(const Modulo *)PointSetvirtual
freshAssembly(FiberEnd which) const Fiberinlinevirtual
getForces(const real *ptr)PointSetinlinevirtual
Mecable::getForces(const real[])=0Mecablepure virtual
getPoints(const real *x)FiberNakedvirtual
Mecable::getPoints(const real[])=0Mecablepure virtual
goodbye(Buddy *)Buddyinlinevirtual
growM(real dlen)FiberNaked
growP(real dlen)FiberNaked
hello(Buddy *b)Buddyinline
infoSegments(real &, real &) const FiberNaked
interpolate(real ab) const FiberNaked
interpolate(real ab, FiberEnd from) const FiberNaked
interpolateCenter() const FiberNaked
interpolateEnd(FiberEnd) const FiberNaked
interpolateM(real ab) const FiberNaked
interpolateMinusEnd() const FiberNakedinline
interpolatePlusEnd() const FiberNakedinline
interpolatePoints(const unsigned int p, const unsigned int q, const real a) const PointSetinline
Inventoried()Inventoriedinline
isGrowing(FiberEnd which) const Fiberinline
isShrinking(FiberEnd which) const Fiberinline
join(Fiber *fib)Fibervirtual
RigidFiber::join(FiberNaked const *fib)FiberNaked
lagrange(unsigned p) const RigidFiberinline
lastPoint() const PointSetinline
lastSegment() const PointSetinline
length() const FiberNakedinline
linked() const Nodeinline
list() const Nodeinline
makeProjection()RigidFiber
makeProjectionDiff(const real *)RigidFibervirtual
mark() const Objectinline
mark(int m)Objectinline
matIndex(Matrix::index_type index)Mecableinline
matIndex() const Mecableinline
Mecable()Mecable
minCosinus() const FiberNaked
minMaxSegments(real &, real &) const FiberNaked
Movable()Movableinline
movePoint(const unsigned int p, Vector const &w)PointSetinline
nbBinders() const Fiberinline
nbBinders(unsigned int(*count)(FiberBinder const &)) const Fiber
nbBindersInRange(real aMin, real aMax, FiberEnd from) const Fiber
nbBindersNearEnd(real len, FiberEnd which) const Fiber
nbKinks(real threshold=0) const FiberNaked
nbPoints() const PointSetinlinevirtual
nbPoints(const unsigned n)PointSetinline
nbSegments() const PointSetinline
netForceP(const unsigned p) const PointSet
Mecable::netForceP(unsigned int p) const =0Mecablepure virtual
next() const Fiberinline
nNextNodeprotected
nNumberInventoriedprotected
Node()Nodeinline
nPrevNodeprotected
number(Number n)Inventoriedinline
number() const Inventoriedinline
Object()Objectinline
objset() const Node
operator=(RigidFiber const &)RigidFiber
FiberNaked::operator=(const PointSet &)PointSet
pointMobility() const RigidFiberinline
PointSet()PointSet
PointSet(const PointSet &)PointSet
pos(real ab) const FiberNaked
pos(real ab, FiberEnd from) const FiberNaked
posEnd(FiberEnd which) const FiberNaked
position() const PointSetvirtual
posM(real ab) const FiberNaked
posP(const unsigned p) const PointSetinline
Mecable::posP(unsigned int P) const =0Mecablepure virtual
prepareMecable()Fibervirtual
prev() const Fiberinline
projectedForceOnEnd(FiberEnd which) const FiberNaked
projectForces(const real *X, real *Y, real s, real *work) const RigidFiber
projectPoint(Vector const &w, real &dist) const Fiber
propFiber
property() const Fiberinlinevirtual
psCenterPointSetprotected
psForPointSetprotected
psPosPointSetprotected
putPoints(real *) const PointSetvirtual
Mecable::putPoints(real[]) const =0Mecablepure virtual
read(InputWrapper &, Simul &)Fibervirtual
readDirection(std::istream &, const Vector &, const Space *)Movablestatic
readPosition(std::istream &, const Space *)Movablestatic
readPrimitive(std::istream &, const Space *)Movablestatic
readReference(InputWrapper &, int &, Number &, int &, char pretag)Objectstatic
readRotation(std::istream &, const Vector &, const Space *)Movablestatic
reference() const Object
removeBinder(FiberBinder *)Fiber
removePoint(unsigned int p)PointSet
resegment(unsigned int nb_points)FiberNaked
resetPoints()PointSet
reshape()FiberNaked
rfMobilityRigidFiberprotected
rfRigidityRigidFiberprotected
RigidFiber()RigidFiber
RigidFiber(RigidFiber const &)RigidFiber
rotatable() const PointSetinlinevirtual
rotate(Rotation const &)PointSetvirtual
rotateP(Rotation const &)Movablevirtual
segment(unsigned int p) const Fiber
segmentation(real c)FiberNakedinline
segmentation() const FiberNakedinline
segmentationCub() const FiberNakedinline
setDragCoefficient()Fibervirtual
setDynamicState(FiberEnd which, int new_state)Fiberinlinevirtual
setGlue(Single *&glue, FiberEnd which, const Space *space, int glue_type)Fiber
setGlue1(Single *glue, FiberEnd which, const Space *space)Fiber
setGlue2(Single *glue, FiberEnd which, const Space *space)Fiber
setGlue3(Single *glue, FiberEnd which, const Space *space)Fiber
setInteractions(Meca &) const Fibervirtual
setLength(real len, FiberEnd ref)FiberNaked
setPoint(unsigned p, Vector const &w)PointSet
setPosition(Vector const &)Movablevirtual
setShape(const real pts[], unsigned n_pts, unsigned np)FiberNaked
setSpeedsFromForces(const real *X, real *Y, real, bool) const RigidFibervirtual
setStraight(Vector const &pos, Vector const &dir)FiberNaked
setStraight(Vector const &pos, Vector const &dir, FiberEnd ref)FiberNaked
setStraight(Vector const &pos, Vector const &dir, real len, FiberEnd ref)FiberNaked
sever(real abs)Fiberinline
severKinkedFibers(FiberSet *set)Fiberprotected
severM(real abs)Fiberprotectedvirtual
severNow(real abs)Fiberinlineprotected
severPoint(unsigned int pti)Fiberprotectedvirtual
signature() const FiberNakedinline
signature(unsigned int s)FiberNakedinline
step()Fibervirtual
storeDifferences()RigidFiberprotected
strReference(char, int, Number, int)Objectstatic
TAGFiberstatic
tag() const Fiberinlinevirtual
tension(unsigned p) const RigidFiberinline
translatable() const PointSetinlinevirtual
translate(Vector const &)PointSetvirtual
truncateM(unsigned int p)FiberNakedvirtual
truncateP(unsigned int p)FiberNakedvirtual
updateBinders()Fiber
useBlock() const Mecableinline
useBlock(bool b)Mecableinline
whichEndDomain(real ab, real lambda) const FiberNaked
within(const real ab) const FiberNakedinline
withinM(const real ab) const FiberNakedinline
withinP(const real ab) const FiberNakedinline
write(OutputWrapper &) const Fibervirtual
writeNullReference(OutputWrapper &)Objectstatic
writeReference(OutputWrapper &) const Object
writeReference(OutputWrapper &, Tag tag) const Object
~Buddy()Buddyinlinevirtual
~Fiber()Fibervirtual
~FiberNaked()FiberNakedinline
~Inventoried()Inventoriedinline
~Mecable()Mecablevirtual
~Movable()Movableinlinevirtual
~Node()Nodevirtual
~PointSet()PointSetinlinevirtual
~RigidFiber()RigidFibervirtual